Add post-hoc analysis exploring removal of collinear analyses #39

egouldo · 2024-06-13T22:21:33Z

create collinearity removed subset #38 create function for generating collinearity subset
add todo comment
create collinearity removed subset #38 create internal dataset with ids of highly collinear bt analyses
create collinearity removed subset #38 regenerate documentation
regenerate documentaiton update description and namespace
create collinearity removed subset #38 update make_viz() to reflect upstream changes - additional col collinearity_subset
Increment version number to 1.2.0
create collinearity removed subset #38 rm collinearity subset before generating outlier subsets - do not generate outlier subsets for collinearity_subset
create collinearity removed subset #38 write collinearity_subset to pkg data - usethis::use_data on collinearity_subset
create collinearity removed subset #38 merge internal data creation together (https://r-pkgs.org/data.html\#sec-data-sysdata)
create collinearity removed subset #38 regenerate sysdata after merging data-raw files
comment out debug cue in targets
create collinearity removed subset #38 regenerate targets pipeline and rebuild pkg
create collinearity removed subset #38 fix error in data subsetting -REMOVE analyses that are highly collinear, rather then subset
- create collinearity removed subset #38 regenerate pipeline and rebuild package after fixing bug in collinearity subsetting
add todo comment consider making objects internal to speedup lazyloading
- create collinearity removed subset #38 eval impact of removing analyses with highly collinear predictor vars
update renv
create collinearity removed subset #38 update data-raw script to incl. additional analyses for
update comment for building internal objects from data-raw
rebuild internal objects create collinearity removed subset #38
create collinearity removed subset #38 update variable coding: - Replace 'rear_nest_CS' with 'NA' for Adelong-1-1-1 and Adelong-2-2-1
create collinearity removed subset #38 fix incorrectly coded analysis variables: - d14_rear_nest_brood_size to NA for both - Adelong-1-1-1 - Adelong-2-2-1
create collinearity removed subset #38 rm investigatory script after running as reprex and gh commenting
create collinearity removed subset #38 update renv
Increment version number to 1.2.0.9000
create collinearity removed subset #38 rerun targets

…llinearity_subset

- do not generate outlier subsets for collinearity_subset

…inearity_subset

…ml\#sec-data-sysdata)

…linear, rather then subset

…linearity subsetting

…r vars

- Replace 'rear_nest_CS' with 'NA' for Adelong-1-1-1 and Adelong-2-2-1

- `d14_rear_nest_brood_size` to `NA` for both - `Adelong-1-1-1` - `Adelong-2-2-1`

egouldo added 27 commits June 7, 2024 00:36

#38 create function for generating collinearity subset

bb8d75d

add todo comment

becaa9c

#38 create internal dataset with ids of highly collinear bt analyses

438dee4

#38 regenerate documentation

45e3a2c

regenerate documentaiton update description and namespace

d339076

#38 update make_viz() to reflect upstream changes - additional col co…

79a4f50

…llinearity_subset

Increment version number to 1.2.0

fcff297

#38 rm collinearity subset before generating outlier subsets

2bff3f1

- do not generate outlier subsets for collinearity_subset

#38 write collinearity_subset to pkg data - usethis::use_data on coll…

0f58bf2

…inearity_subset

#38 merge internal data creation together (https://r-pkgs.org/data.ht…

7a32ff3

…ml\#sec-data-sysdata)

#38 regenerate sysdata after merging data-raw files

d6fd9bf

comment out debug cue in targets

11fdb3b

#38 regenerate targets pipeline and rebuild pkg

2fdbc5f

#38 fix error in data subsetting -REMOVE analyses that are highly col…

6d14781

…linear, rather then subset

- #38 regenerate pipeline and rebuild package after fixing bug in col…

a8d7637

…linearity subsetting

add todo comment consider making objects internal to speedup lazyloading

fe02362

- #38 eval impact of removing analyses with highly collinear predicto…

fdef97a

…r vars

update renv

b4c9767

#38 update data-raw script to incl. additional analyses for

71be604

update comment for building internal objects from data-raw

854c32a

rebuild internal objects #38

b6affb9

#38 update variable coding:

cbe8d15

- Replace 'rear_nest_CS' with 'NA' for Adelong-1-1-1 and Adelong-2-2-1

#38 fix incorrectly coded analysis variables:

b497dc4

- `d14_rear_nest_brood_size` to `NA` for both - `Adelong-1-1-1` - `Adelong-2-2-1`

#38 rm investigatory script after running as reprex and gh commenting

2c55d31

#38 update renv

19869e9

Increment version number to 1.2.0.9000

1f67263

#38 rerun targets

ec6eefa

egouldo added this to the respond-re milestone Jun 13, 2024

egouldo added the enhancement label Jun 13, 2024

egouldo merged commit 7c11bf7 into main Jun 13, 2024
1 check passed

egouldo deleted the collinearity_removal_analysis branch June 13, 2024 22:21

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Add post-hoc analysis exploring removal of collinear analyses #39

Add post-hoc analysis exploring removal of collinear analyses #39

egouldo commented Jun 13, 2024

Add post-hoc analysis exploring removal of collinear analyses #39

Add post-hoc analysis exploring removal of collinear analyses #39

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egouldo commented Jun 13, 2024